Review



sp6 mmessage mmachine in vitro transcription kit am1340  (Thermo Fisher)


Bioz Verified Symbol Thermo Fisher is a verified supplier
Bioz Manufacturer Symbol Thermo Fisher manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 90

    Structured Review

    Thermo Fisher sp6 mmessage mmachine in vitro transcription kit am1340
    Sp6 Mmessage Mmachine In Vitro Transcription Kit Am1340, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/mmessage+mmachine+t7+transcription+kit/pmc12255298-193-1-8
    Average 90 stars, based on 1 article reviews
    sp6 mmessage mmachine in vitro transcription kit am1340 - by Bioz Stars, 2026-10
    90/100 stars

    Images

    Related Articles

    Virus:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Recombinant:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Cloning:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Plasmid Preparation:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Microinjection:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    In Vitro:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Protease Inhibitor:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Multiplex Assay:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Picogreen Assay:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Chromatin Immunoprecipitation:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    RNA Sequencing:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Binding Assay:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.

    Purification:

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia
    Article Snippet: The pCS2- Stat3 , pCS2- Stat3Y705F and pCS2- Stat3S727A vectors were previously obtained by Peron and collaborators [ ]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Transcriptome remodelling and changes in growth and cardiometabolic phenotype result following Grb10a knockdown in the early life of the zebrafish
    Article Snippet: Capped RNA was generated using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s instructions.

    Article Title: An Irak1-Mecp2 tandem duplication mouse model for the study of MECP2 duplication syndrome.
    Article Snippet: Briefly, to produce the SpCas9-FKB and the SaCas9-FRB mRNA for the microinjection, pCS2+ plasmids were linearized with NotI restriction digestion and used as template for in vitro transcription using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific).

    Article Title: NERNST: a genetically-encoded ratiometric non-destructive sensing tool to estimate NADP(H) redox status in bacterial, plant and animal systems.
    Article Snippet: Forty ng of linearized plasmid were in vitro transcribed with the mMESSAGE mMACHINE® SP6 Transcription Kit from Ambion (Thermo Fisher) following the manufacturer’s instructions.

    Article Title: Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
    Article Snippet: In brief Luo et al. developed a method to generate dorsal-ventral (D-V) patterned neural tube organoids (NTOs) from both zebrafish and human pluripotent stem cells (hPSCs) by engineering opposing BMP and SHH signaling centers.. The human NTOs recapitulate the full complement of 13 neural progenitor subtypes arranged along the D-V axis, with transcriptomic profiling revealing high similarity to the human embryonic spinal cord at Carnegie stage 12.

    Article Title: Attenuation of Chikungunya Virus by a Single Amino Acid Substitution in the nsP1 Component of a Non-Structural Polyprotein.
    Article Snippet: Capped RNA transcripts were synthesised by utilizing the SP6 polymerase promoter situated upstream from the CHIKV insert using the mMESSAGE mMACHINE® SP6 transcription kit according to the manufacturer’s instructions (AmbionTM ThermoFisher Scientific, Dartmouth, UK).

    Article Title: STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
    Article Snippet: The pCS2-Stat3, pCS2-Stat3Y705F and pCS2-Stat3S727A vectors were previously obtained by Peron and collaborators [43]. mRNAs were in vitro transcribed using the mMESSAGE mMACHINE® SP6 Transcription Kit (Thermo Fisher Scientific) and purified using the RNA Clean and Concentrator kit (Zymo Research).

    Article Title: Activator-blocker model of transcriptional regulation by pioneer-like factors
    Article Snippet: Uncropped gel images for Figure S7 Supplementary Table REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Histone H3 (acetyl K27) rabbit, 1/100 dilution Abcam plc., Cambridge, UK ab 4729 Chemicals, Peptides, and Recombinant Proteins cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Sigma-Aldrich Chemie GmbH, Germany 5056489001 SYTOX Green ThermoFisher SCIENTIFIC S7020 Critical Commercial Assays Agencourt® AMPure® XP Beads Beckmann Coulter, Krefeld, Germany A63880 Agilent High Sensitivity DNA Kit Agilent Technologies, Santa Clara, California, USA 5067-4626 Agilent RNA 6000 Nano Kit Agilent Technologies, Santa Clara, California, USA 5067-1511 Dynabeads® Protein G invitrogen DynaI AS, Oslo, Norway 10003D E.Z.N.A® Cycle Pure Kit Omega Biotek, Norcross, Georgia, USA D6493-02 Illumina Tagment DNA Enzyme and Buffer Small Kit Illumina 20034197 Microcon®-30 Centrifugal Filters Merck Millipore, Darmstadt, Germany MRCF0R030 mMESSAGE mMACHINE® SP6 transcription Kit Ambion 10086184 NEBNext Ultra DNA Library Prep Kit for Illumina New England Biolabs, Inc., Frankfurt a.M., Germany E7370S NEBNext® Multiplex Oligos for Illumina® (Index Primers Set 1) New England Biolabs, Inc., Frankfurt a.M., Germany E7335S RNeasy® Mini Kit QIAGEN, Hilden, Germany 74104 Quant-iTTM PicoGreen® dsDNA Assay Kit invitrogenTM Molecular Probes® Waltham, Massachusetts, USA Q33120 Deposited Data Omni ATAC-seq of the wild-type, MZsox19b, MZspg, MZps zebrafish embryos at 3.7 and 4.3 hpf Gao et al., 2022 GEO: GSE188364 Omni ATAC-seq of the wild-type, MZnanog, MZpn, MZsn and MZtriple zebrafish embryos at 3.0, 3.7 and 4.3 hpf this work GEO: GSE215956 Omni ATAC-seq and H3K27ac ChIP-seq of the wild-type and MZnps zebrafish embryos at 4 hpf Miao et al., 2022 SRA: SRP355652 Time-resolved RNA-seq at 8 time points in the wild-type, MZsox19b, MZspg, MZnanog, MZps, MZpn, MZsn and MZtriple zebrafish embryos this work GEO: GSE162415 ChIP-seq for H3K27ac in the wild-type, MZspg and MZsox19b zebrafish embryos, 4.3 hpf Gao et al., 2022 GEO: GSE143306 ChIP-seq for H3K27ac in the MZnanog zebrafish embryos, 4.3 hpf this work GEO: GSE143439 ChIP-seq for Pou5f3 and Sox2 (SoxB1) TF binding, 5.3 hpf.



    Similar Products

    90
    Thermo Fisher sp6 mmessage mmachine in vitro transcription kit am1340
    Sp6 Mmessage Mmachine In Vitro Transcription Kit Am1340, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/mmessage+mmachine+t7+transcription+kit/pmc12255298-193-1-8
    Average 90 stars, based on 1 article reviews
    sp6 mmessage mmachine in vitro transcription kit am1340 - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    86
    Fisher Scientific mmessage mmachine sp6 transcription kit
    Mmessage Mmachine Sp6 Transcription Kit, supplied by Fisher Scientific, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/kit+mmachine+mmessage+sp6/pmc13021935-50-0-6
    Average 86 stars, based on 1 article reviews
    mmessage mmachine sp6 transcription kit - by Bioz Stars, 2026-10
    86/100 stars
      Buy from Supplier

    86
    Fisher Scientific mmessage mmachine tm sp6 transcription kit
    Mmessage Mmachine Tm Sp6 Transcription Kit, supplied by Fisher Scientific, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/kit+mmachine+mmessage+sp6/pmc12333044-29-0-7
    Average 86 stars, based on 1 article reviews
    mmessage mmachine tm sp6 transcription kit - by Bioz Stars, 2026-10
    86/100 stars
      Buy from Supplier

    90
    Thermo Fisher mmessage mmachine® sp6 transcription kit
    Mmessage Mmachine® Sp6 Transcription Kit, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/mmessage+mmachine+t7+transcription+kit/pmc12276197-72-6-11
    Average 90 stars, based on 1 article reviews
    mmessage mmachine® sp6 transcription kit - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher mmessage mmachine sp6 transcription kit
    Mmessage Mmachine Sp6 Transcription Kit, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/mmessage+mmachine+t7+transcription+kit/pmc11126968__pnas__2321388121__sapp-5-8-13
    Average 90 stars, based on 1 article reviews
    mmessage mmachine sp6 transcription kit - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher mmessage mmachine sp6 transcription kit am1340
    Mmessage Mmachine Sp6 Transcription Kit Am1340, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mmessage+mmachine%C2%AE+sp6+transcription+kit/mmessage+mmachine+t7+transcription+kit/pm40614256-277-16-21
    Average 90 stars, based on 1 article reviews
    mmessage mmachine sp6 transcription kit am1340 - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    Image Search Results